Publications
Found 80 scientific publications (published or accepted for publication in forums with peer review).
Simula has implemented a set of publication guidelines based on the Vancouver Convention, which are enforced for all publications available in our online database.
2012
Articles in International Journals
O. Al-Khayat and H. P. Langtangen. Computational aspects of multiscale simulation with the lumped particle framework, Communications in Computational Physics 12(4):1257-1274, 2012.
S. R. Clark, J. Skogseid, M. Smethurst, C. Tarrou, T. V. Stensby, A. M. Bruaset, and A. K. Thurmond. On the fly visualization of multilayer geoscientific datasets using 4DPlates, Accepted for publication in Computers & Geoscience, 2012.
T. Gillberg, Ø. Hjelle, and A. M. Bruaset. Accuracy and Efficiency of Stencils for the Eikonal Equation in Earth Modelling, Accepted for publication in Computational Geosciences, 2012.
J. B. Haga,
H. P. Langtangen,
and
H. Osnes.
A parallel block preconditioner for large scale poroelasticity with highly heterogeneous material parameters,
Computational Geosciences(online),
2012.
D. Unat, J. Zhou, Y. Cui, S. Baden, and X. Cai. Accelerating a 3D Finite-Difference Earthquake Simulation with a C-to-CUDA Translator, Computing in Science & Engineering 14(3):48-59, 2012.
Refereed Proceedings
W. Zhang and X. Cai. Efficient implementations of the Adams-Bashforth-Moulton method for solving fractional differential equations, In: Proceedings of FDA'12, 2012.
Chapters in Books
L. Vynnytska, S. R. Clark, and M. E. Rognes. Dynamic simulations of convection in the Earth’s mantle, In: Automated Solution of Differential Equations by the Finite Element Method, ed. by A. Logg, K.-A. Mardal and G. Wells. Springer , Berlin Heidelberg, vol. 84, chap. 31, pp. 587-602. Lecture Notes in Computational Science and Engineering,, 2012.
Contributed talk
T. Gillberg.
Massively Parallel Front Tracking ,
Computational Geoscience Workshop, 18-20 January 2012 in Geilo,
2012.
2011
Articles in International Journals
O. Al-Khayat, A. M. Bruaset, and H. P. Langtangen. Particle collisions in a lumped particle model , Communications in Computational Physics 10(4):823-843, 2011.
J. B. Haga,
H. Osnes,
and
H. P. Langtangen.
On the causes of pressure oscillations in low-permeable and low-compressible porous media,
International Journal for Numerical and Analytical Methods in Geomechanics(online),
2011.
J. B. Haga,
H. Osnes,
and
H. P. Langtangen.
Efficient block preconditioners for the coupled equations of pressure and deformation in highly discontinuous media,
International Journal for Numerical and Analytical Methods in Geomechanics 35(13):1466-1482,
2011.
M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines, and X. Cai. Stability of two time-integrators for the Aliev-Panfilov system, International Journal of Numerical Analysis and Modeling 8(3):427-442, 2011.
L. Vynnytska, M. E. Rognes, and S. R. Clark. Benchmarking FEniCS for Mantle Convection Simulations, Submitted to Computers & Geosciences, 2011.
Refereed Proceedings
S. R. Clark. Calculating Uncertainty in Geodynamic Models of Subduction, In: MODSIM 2011, Modelling and Simulation Society of Australia and New Zealand, 2011.
T. Gillberg.
A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding,
In: MODSIM2011, 19th International Congress on Modelling and Simulation, ed. by Chan, F. and Marinova, D. and Anderssen, B., pp. 631-647, Modelling and Simulation Society of Australia and New Zealand, Modelling and Simulation Society of Australia and New Zealand Inc. (MSSANZ) (ISBN: 978-0-9872143-1-7),
2011.
D. Unat, X. Cai, and S. Baden. Mint: Realizing CUDA performance in 3D stencil methods with annotated C, In: Proceedings of the 25th International Conference on Supercomputing (ICS'11), ed. by Lowenthal, David K. and de Supinski, Bronis R. and McKee, Sally A., pp. 214-224, ACM Press, 2011.
L. Vynnytska and S. R. Clark. FEniCS Framework in Geoscientific Applications, In: MODSIM 2011, ed. by Ed, Modelling and Simulation Society of Australia and New Zealand, 2011.
W. Wei, O. Al-Khayat, and X. Cai. An OpenMP-enabled parallel simulator for particle transport in fluid flows, In: Proceedings of the 2011 International Conference on Computational Science, ed. by M. Sato and S. Matsuoka, vol. 4, pp. 1475-1484, Elsevier Science. Procedia Computer Science, 2011.
Technical Reports
R. Lorentzen.
Finding the set of measurements necessary to reveal the state of a static system ,
Simula Research Laboratory, Technical Report(2011-12),
2011.
Contributed talk
X. Cai. A function-centric generic framework for parallelization, Talk at CLS Workshop at UiO on April 13, 2011.
X. Cai. Study of the computational efficiency for different usages of Pythoning, Talk at CLS Workshop at UiO on April 13, 2011.
X. Cai
and
W. Zhang.
Efficient computations of initial-value problems involving fractional derivatives,
Talk at the seminar on wave propagation in complex media, November 23,
2011.
T. Gillberg. A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding, The 19th International Congress on Modelling and Simulation (MODSIM2011), 2011.
R. Nerlich,
S. R. Clark,
and
Hans-P. Bunge.
Reconstructing the Scotia Sea: an evaluation of existing plate reconstructions and their kinematic and dynamic implications,
EGU General Assembly,
2011.
Invited Talks
X. Cai. Parallel simulation of particle transport using OpenMP, Guest lecture at UCSD on January 31, 2011.
X. Cai. Programming with OpenMP and mixed MPI-OpenMP, Invited lecture at pre-conference workshop of NOTUR 2011, 2011.
X. Cai.
Programming with OpenMP and mixed MPI-OpenMP,
Invited lecture during USIT's Research Computing Services training week, November 14-17,
2011.
Posters
L. Vynnytska and S. R. Clark. Simulation of 2D Mantle Convection using FEniCS Framework, SAMPLE workshop in Potsdam, Germany (June, 7 - 10, 2011), 2011.
2010
Books
A. Tveito, H. P. Langtangen, B. F. Nielsen, and X. Cai. Elements of Scientific Computing, Springer, 2010.
PhD Theses
O. Al-Khayat. Mesoscale modeling of particle flow, PhD thesis, University of Oslo, 2010.
Articles in International Journals
O. Al-Khayat, A. M. Bruaset, and H. P. Langtangen. A lumped particle modeling framework for simulating particle transport in fluids , Communications in Computational Physics 8(1):115-142, 2010.
P. Li, W. Wei, X. Cai, C. Soeller, M. Cannell, and A. V. Holden. Computational modeling of the initiation and development of spontaneous intracellular Ca2+ waves in ventricular myocytes, Philosophical Transactions of the Royal Society A 368(1925):3953-3965, 2010.
J. K. Nilsen, X. Cai, B. Høyland, and H. P. Langtangen. Simplifying the parallelization of scientific codes by a function-centric approach in Python, Computational Science & Discovery 3(0):015003, 2010.
Refereed Proceedings
S. R. Clark,
W. Wei,
and
X. Cai.
Numerical analysis of a dual-sediment transport model applied to Lake Okeechobee, Florida,
In: Proceedings of the 2010 Ninth International Symposium on Parallel and Distributed Computing, ed. by Can Ozturan, pp. 189--194, IEEE Computer Society Press. ISPDC '10,
2010.
Chapters in Books
A. Schroll. Automatic Calibration of Depositional Models, In: Automated Scientific Computing, ed. by Logg, Anders and Mardal, Kent-Andre and Wells, Garth N.. Springer Berlin Heidelberg, chap. , pp. , 2010.
J. T.-C. Yeh, X. Cai, H. P. Langtangen, J. Zhu, and Chuen-F. Ni. Parallel computing engines for subsurface imaging technologies, In: Advanced Computational Infrastructures for Parallel and Distributed Adaptive Applications, ed. by M. Parashar, X. Li. John Wiley & Sons, Inc., Hoboken, New Jersey, chap. 3, pp. 29-43. Wiley Series of Parallel and Distributed Computing, 2010.
Technical Reports
R. Lorentzen.
Allocation of Students to Study Groups — Working Paper,
Simula Research Laboratory, Working Paper (Simula Technical Report Series 2010-02),
2010.
R. Lorentzen,
Ø. Hjelle,
H. P. Langtangen,
and
A. M. Bruaset.
Extrapolation from a very Low Number of Computer Experiments,
Simula Research Laboratory, (Simula Technical Report Series 2010-06),
2010.
Contributed talk
H. C. Bender,
A. Thurmond,
J. Skogseid,
and
S. R. Clark.
Microplate Modeling of the Afar Depression using 4D lithospheric model (4DLM) and Splates: Implications for Development of Plate Boundaries,
Talk given at Geological Society of America,
2010.
X. Cai. Parallel programming using Python, CBC Seminar on advanced use of Python programming language, 2010.
X. Cai,
D. Unat,
and
S. Baden.
Detailed Numerical Analyses of the Aliev-Panfilov Model on GPGPU,
Talk at PARA2010 Conference,
2010.
A. Schroll. Scientific Computing - the (he)art of modern sciences, Forskningens Dag, SDU, 2010.
D. Unat,
X. Cai,
and
S. Baden.
Optimizing the Aliev-Panfilov Model of Cardiac Excitation on Heterogeneous Systems,
Talk at Para 2010: State of the Art in Scientific and Parallel Computing in Reykjavík on June 6-9, 2010,
2010.
W. Wei. Parallel Programming, OpenMP, CBC Lecture on Parallel Programming, OpenMP, March 17, 2010.
W. Wei
and
X. Cai.
OpenMP: An Easy Parallel Approach for Scientific Computing on Multi-core Architecture,
A short course respectively given at Simula in March and University of Oslo in May,
2010.
Invited Talks
X. Cai. A non-invasive approach to parallelizing sequential simulators of partial differential equations, Guest lecture at UCSD on October 28, 2010.
Conference Reference
O. Al-Khayat. A multiscale lumped particle modeling framework for the simulation of turbidity currents, In: 7th EGU General Assembly, vol. 12, Copernicus GmbH, 2010.
S. R. Clark.
Geodynamic models assist in determining the South Loyalty Basin's slab location and its implications for regional topography,
In: Geophysical Research Abstracts, vol. 11, European Geoscience Union, Copernicus GmbH,
2010.
A. Schroll. Automatic Calibration of Depositional Models, In: Book of Abstracts, Scientific Computing Seminar, Christian-Albrechts-Universität zu Kiel, 2010.
A. Schroll. On high-resolution shock simulations - breaking the course of Godunov's theorem , In: Book of Abstracts, Cut Cell Methods for Atmosphere and Ocean Modeling, Freie Universität Berlin, 2010.
