Publications
Found 99 scientific publications (published or accepted for publication in forums with peer review).
Simula has implemented a set of publication guidelines based on the Vancouver Convention, which are enforced for all publications available in our online database.
2013
Articles in International Journals
J. Chai, H. Su, M. Wen, X. Cai, N. Wu, and C. Zhang. Resource-efficient utilization of CPU/GPU-based heterogeneous supercomputers for Bayesian phylogenetic inference, Accepted for publication in The Journal of Supercomputing, 2013.
Ø. Hjelle, S. A. Petersen, and A. M. Bruaset. A Numerical Framework for Modelling Folds in Structural Geology, Mathematical Geosciences 45(3):255-276, 2013.
L. Vynnytska, M. E. Rognes, and S. R. Clark. Benchmarking FEniCS for Mantle Convection Simulations, Computers & Geosciences 50(1):95–105, 2013.
W. Wei, S. Clark, H. Su, M. Wen, and X. Cai. Balancing efficiency and accuracy for sediment transport simulations, Submitted to journal, 2013.
Refereed Proceedings
H. Su, N. Wu, M. Wen, C. Zhang, and X. Cai. Performance of Sediment Transport Simulations on NVIDIA’s Kepler Architecture, In: Proceedings of the International Conference on Computational Science, ICCS 2013, ed. by , Elsevier, 2013.
H. Su, N. Wu, M. Wen, C. Zhang, and X. Cai. On the GPU Performance of 3D Stencil Computations Implemented in OpenCL, In: Proceedings of International Supercomputing Conference, ISC 2013, ed. by , Springer, 2013.
Invited Talks
2012
PhD Theses
W. Wei. Effective Use of Multicore-based Parallel Computers for Scientific Computing, PhD thesis, University of Oslo, 2012.
Articles in International Journals
O. Al-Khayat and H. P. Langtangen. Computational aspects of multiscale simulation with the lumped particle framework, Communications in Computational Physics 12(4):1257-1274, 2012.
S. R. Clark,
J. Skogseid,
M. Smethurst,
C. Tarrou,
T. V. Stensby,
A. M. Bruaset,
and
A. K. Thurmond.
On the fly visualization of multilayer geoscientific datasets using 4DPlates,
Computers & Geoscience 47(1):46-51,
2012.
T. Gillberg, Ø. Hjelle, and A. M. Bruaset. Accuracy and Efficiency of Stencils for the Eikonal Equation in Earth Modelling, Computational Geosciences 16(4):933-952, 2012.
J. B. Haga,
H. P. Langtangen,
and
H. Osnes.
A parallel block preconditioner for large scale poroelasticity with highly heterogeneous material parameters,
Computational Geosciences 16(3):723-734,
2012.
R. Nerlich,
S. R. Clark,
and
H. P. Bunge.
The Scotia Sea gateway: No outlet for Pacific mantle,
Accepted for publication in Tectonophysics,
2012.
D. Unat, J. Zhou, Y. Cui, S. Baden, and X. Cai. Accelerating a 3D Finite-Difference Earthquake Simulation with a C-to-CUDA Translator, Computing in Science & Engineering 14(3):48-59, 2012.
Refereed Proceedings
T. Gillberg, Ø. Hjelle, and A. M. Bruaset. A Parallel 3D Front Propagation Algorithm for Simulation of Geological Folding on GPUs, In: EAGE 74th Conference & Exhibition, Copenhagen, ed. by Eage, EAGE, EarthDoc. Extended Abstracts, 2012.
T. Gillberg, M. Sourouri, and X. Cai. A New Parallel 3D Front Propagation Algorithm for Fast Simulation of Geological folds, In: Proceedings of the International Conference on Computational Science, ICCS 2012, ed. by Ali, Hesham and Shi, Yong and Khazanchi, Deepak and Lees, Michael and van Albada, G. Dick and Dongarra, Jack and M.A. Sloot, Peter and Dongarra, Jack , vol. 9(0), pp. 947-955, ICCS, Amsterdam, Elsevier. Procedia Computer Science, 2012.
M. Meswani, L. Carrington, D. Unat, A. Snavely, S. Baden, and S. Poole. Modeling and Predicting Performance of High Performance Computing Applications on Hardware Accelerators, In: Proceedings of IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum , ed. by , pp. 1828-1837, IEEE Computer Society, 2012.
M. Wen, H. Su, W. Wei, N. Wu, X. Cai, and C. Zhang. Using 1000+ GPUs and 10000+ CPUs for Sedimentary Basin Simulations, In: Proceedings of IEEE Cluster 2012, ed. by , pp. 27-35, IEEE, 2012.
W. Zhang and X. Cai. Efficient implementations of the Adams-Bashforth-Moulton method for solving fractional differential equations, In: Proceedings of FDA'12, 2012.
Chapters in Books
L. Vynnytska, S. R. Clark, and M. E. Rognes. Dynamic simulations of convection in the Earth’s mantle, In: Automated Solution of Differential Equations by the Finite Element Method, ed. by Logg, Anders and Mardal, Kent-Andre and Wells, Garth N.. Springer , Berlin Heidelberg, vol. 84, chap. 31, pp. 587-602. Lecture Notes in Computational Science and Engineering. (ISBN: 978-3-642-23098-1), 2012.
Contributed talk
X. Cai.
Some perspectives on high-performance computing in the Geosciences,
Computational Geoscience Workshop, Geilo, January 19,
2012.
T. Gillberg. A Parallel 3D Front Propagation Algorithm for Simulation of Geological Folding on GPUs, EAGE 74th Conference & Exhibition, 2012.
T. Gillberg.
Massively Parallel Front Tracking ,
Computational Geoscience Workshop, 18-20 January 2012 in Geilo,
2012.
Invited Talks
X. Cai.
Scientific computing needs supercomputers, but also something else!,
Invited lecture at National University of Defence Technology, China, March 29,
2012.
S. R. Clark, L. Vynnytska, and A. Schroll. An Inverse Approach to Stratigraphic Modelling, 34th International Geological Congress, Brisbane, Australia, 2012.
G. T. Lines
and
X. Cai.
Elements of Scientific Computing,
3-day intensive course given at National University of Defence Technology, China, October 16-18,
2012.
M. Sourouri.
Intel Many Integrated Core Architecture: Scaling multi-core to many-core,
University of California, San Diego,
2012.
Posters
L. Vynnytska, D. Stegman, and S. R. Clark. The Afar Region: Numerical Modeling Using Geological Data, EGU general assembly, 2012.
Public Outreaches
X. Cai and M. Wen. Simulating basin evolution on GPU-enhanced hybrid supercomputers, META Magazine, Issue 02/2012, pages 22-25, 2012.
Master's Theses
M. Sourouri. A Parallel Front Propagation Method, Masters thesis, University of Oslo, 2012.
2011
Articles in International Journals
O. Al-Khayat, A. M. Bruaset, and H. P. Langtangen. Particle collisions in a lumped particle model , Communications in Computational Physics 10(4):823-843, 2011.
J. B. Haga,
H. Osnes,
and
H. P. Langtangen.
On the causes of pressure oscillations in low-permeable and low-compressible porous media,
International Journal for Numerical and Analytical Methods in Geomechanics(online),
2011.
J. B. Haga,
H. Osnes,
and
H. P. Langtangen.
Efficient block preconditioners for the coupled equations of pressure and deformation in highly discontinuous media,
International Journal for Numerical and Analytical Methods in Geomechanics 35(13):1466-1482,
2011.
M. Hanslien, R. Artebrant, A. Tveito, G. T. Lines, and X. Cai. Stability of two time-integrators for the Aliev-Panfilov system, International Journal of Numerical Analysis and Modeling 8(3):427-442, 2011.
Refereed Proceedings
S. R. Clark. Calculating Uncertainty in Geodynamic Models of Subduction, In: MODSIM 2011, ed. by , Modelling and Simulation Society of Australia and New Zealand, , 2011.
T. Gillberg.
A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding,
In: MODSIM2011, 19th International Congress on Modelling and Simulation, ed. by Chan, F. and Marinova, D. and Anderssen, B., pp. 631-647, Modelling and Simulation Society of Australia and New Zealand, Modelling and Simulation Society of Australia and New Zealand Inc. (MSSANZ) (ISBN: 978-0-9872143-1-7),
2011.
D. Unat, X. Cai, and S. Baden. Mint: Realizing CUDA performance in 3D stencil methods with annotated C, In: Proceedings of the 25th International Conference on Supercomputing (ICS'11), ed. by Lowenthal, David K. and de Supinski, Bronis R. and McKee, Sally A., pp. 214-224, ACM Press, 2011.
L. Vynnytska and S. R. Clark. FEniCS Framework in Geoscientific Applications, In: MODSIM 2011, ed. by Ed, Modelling and Simulation Society of Australia and New Zealand, 2011.
W. Wei, O. Al-Khayat, and X. Cai. An OpenMP-enabled parallel simulator for particle transport in fluid flows, In: Proceedings of the International Conference on Computational Science, ICCS 2011, ed. by M. Sato and S. Matsuoka, vol. 4, pp. 1475-1484, Elsevier Science. Procedia Computer Science, 2011.
Technical Reports
R. Lorentzen.
Finding the set of measurements necessary to reveal the state of a static system ,
Simula Research Laboratory, Technical Report(2011-12),
2011.
Contributed talk
X. Cai. A function-centric generic framework for parallelization, Talk at CLS Workshop at UiO on April 13, 2011.
X. Cai. Study of the computational efficiency for different usages of Pythoning, Talk at CLS Workshop at UiO on April 13, 2011.
X. Cai
and
W. Zhang.
Efficient computations of initial-value problems involving fractional derivatives,
Talk at the seminar on wave propagation in complex media, November 23,
2011.
T. Gillberg. A Semi-Ordered Fast Iterative Method (SOFI) for Monotone Front Propagation in Simulations of Geological Folding, The 19th International Congress on Modelling and Simulation (MODSIM2011), 2011.
R. Nerlich,
S. R. Clark,
and
Hans-P. Bunge.
Reconstructing the Scotia Sea: an evaluation of existing plate reconstructions and their kinematic and dynamic implications,
EGU General Assembly,
2011.
Invited Talks
X. Cai. Parallel simulation of particle transport using OpenMP, Guest lecture at UCSD on January 31, 2011.
X. Cai.
Programming with OpenMP and mixed MPI-OpenMP,
Invited lecture during USIT's Research Computing Services training week, November 14-17,
2011.
Posters
L. Vynnytska and S. R. Clark. Simulation of 2D Mantle Convection using FEniCS Framework, SAMPLE workshop in Potsdam, Germany (June, 7 - 10, 2011), 2011.
2010
Books
A. Tveito, H. P. Langtangen, B. F. Nielsen, and X. Cai. Elements of Scientific Computing, Springer, 2010.
