Publications
Found 14 scientific publications (published or accepted for publication in forums with peer review).
Simula has implemented a set of publication guidelines based on the Vancouver Convention, which are enforced for all publications available in our online database.
2012
Articles in International Journals
A. Tveito, G. T. Lines, J. E. Hake, A. G. Edwards, , and . Instabilities of the resting state in a mathematical model of calcium concentrations in cardiac myocytes, Mathematical Biosciences 236:97–107, 2012.
Chapters in Books
J. E. Hake.
A coupled stochastic and deterministic model of Ca2+ dynamics in the dyadic cleft,
In: Automated Solution of Differential Equations by the Finite Element Method, ed. by Logg, Anders and Mardal, Kent-Andre and Wells, Garth N.. Springer, vol. 84, chap. 33, pp. 611--627. Lecture Notes in Computational Science and Engineering,,
2012.
J. E. Hake
and
Kent-A. Mardal.
Lessons learned in mixed language programming,
In: Automated Solution of Differential Equations by the Finite Element Method, ed. by Logg, Anders and Mardal, Kent-Andre and Wells, Garth N. Springer, vol. 84, chap. 19, pp. 363--381,
2012.
A. Logg,
G. N. Wells,
and
J. E. Hake.
DOLFIN: A C++/Python finite element library,
In: Automated Solution of Differential Equations by the Finite Element Method, ed. by Logg, Anders and Mardal, Kent-Andre and Wells, Garth N. Springer, vol. 84, chap. 10, pp. 173--225. Lecture Notes in Computational Science and Engineering,,
2012.
2011
Articles in International Journals
Y. Cheng, P. Kekenes-Huskey, J. E. Hake, M. J. Holst, A. J. McGammon, and A. P. Michailova. From Molecular Electro-Diffusion to Sub-Cellular Signaling Transduction, Submitted to Computational Science & Discovery, 2011.
Posters
J. E. Hake, W. E. Louch, K. Haugen, I. Sjaastad, O. M. Sejersted, A. McCulloch, A. P. Michailova, and G. T. Lines. A stochastic model of the ryanodine receptor featuring coupled gating and competitive binding of luminal and cytosolic Ca2+ and Mg2+, Annual meeting in Biophysical Society, 2011.
P. Kekenes-Huskey, J. E. Hake, Y. Cheng, F. Sachse, J. Bridge, A. McCammon, and A. P. Michailova. Contributions of multiple t-tubules and membrane Ca2+ flux localization to sub-cellular Ca2+ signaling in rabbit ventricular myocytes, 2. Gordon Research Conferences: Calcium Signalling, 2011.
P. Kekenes-Huskey, J. E. Hake, Y. Cheng, F. Sachse, J. Bridge, A. J. McCammon, and A. P. Michailova. Contributions of structural t-tubule heterogeneities and membrane Ca2+ flux localization to local Ca2+ signaling in rabbit ventricular myocytes, 4th Cardiac Physiome Workshop, Merton College, Oxford, 2011.
2010
Articles in International Journals
W. E. Louch,
J. E. Hake,
G. F. Jølle,
H. K. Mørk,
I. Sjaastad,
G. T. Lines,
and
O. M. Sejersted.
Control of Ca2+ Release by Action Potential Configuration in Normal and Failing Murine Cardiomyocytes,
Biophysical Journal 99(5):1377-1386,
2010.
Chapters in Books
A. Logg,
G. N. Wells,
and
J. E. Hake.
DOLFIN: a C++/Python Finite Element Library,
In: Automated Scientific Computing, ed. by Anders Logg, Kent-Andre Mardal and Garth N. Wells. Springer-Verlag, chap. 11, pp. 165--212,
2010.
Conference Reference
J. E. Hake.
Modeling of Ca dynamics in the dyadic cleft: Mixing continuous description of the diffusive process with discrete channel dynamics,,
In: Biological Diffusion and Brownian Dynamics Brainstorm 2, Molecular and Cellular Modeling (MCM) group at the HITS,
2010.
J. E. Hake, G. F. Jølle, H. K. Mørk, I. Sjaastad, O. M. Sejersted, W. E. Louch, and G. T. Lines. Control of Ca Release Synchrony by Action Potential Configuration in Murine Cardiomyocytes, In: Biophysical Journal, vol. 98(3), pp. 296a, Biophysical Journal, 2010.
2009
PhD Theses
J. E. Hake.
Calcium dynamics in signaling micro domains of cardiac myocytes - a modelling study,
PhD thesis, University of Oslo, Unipub,
2009.
2008
Articles in International Journals
J. E. Hake
and
G. T. Lines.
Stochastic binding of Ca2+ in the dyadic cleft: continuous vs. random-walk description of diffusion. ,
Biophysical Journal 94(11):4184-4201,
2008.
Contributed talk
J. E. Hake and G. T. Lines. Modelling the mesoscopic length scale of EC coupling: the diadic cleft, Invited talk at 'European Conference on Mathematical and Theoretical Biology', 2008.
2007
Contributed talk
J. E. Hake. Subcellular calsium handling, Talk at CBC, Seminar on Electrophysiology Modeling, 2007.
J. E. Hake
and
G. T. Lines.
Stochastic binding of Ca2+ ions in the dyadic cleft continuous vs Random walk description of diffusion,
Poster presentation at 5th Annual CHFR Symposium,
2007.
J. E. Hake
and
G. T. Lines.
Stochastic binding of Ca2+ ions in the dyadic cleft continuous vs Random walk description of diffusion,
Presentation at ICIAM 07,
2007.
2003
Master's Theses
J. E. Hake.
Simulation of Neuronal Networks using NEST.,
Masters thesis, The Norwegian University of Life Science (UMB),
2003.
